Publications

Bekhuis T, EDDA Analytics Group™. Library workshops in support of data-driven research in top NIH‑ and NSF-funded universities [no. 00170205]. Pittsburgh, PA, USA: TCB Research & Indexing LLC. February 2017. [Received an award from the Medical Library Association.]  https://doi.org/10.13140/RG.2.2.10522.85445.

Castro SM, Tseytlin E, Medvedeva O, Mitchell KJ, Visweswaran S, Bekhuis T, Jacobson RS. Automated annotation and classification of BI-RADS assessment from radiology reports. Journal of Biomedical Informatics. Journal of Biomedical Informatics. 2017 April 17. pii: S1532-0464(17)30081-3. doi: 10.1016/j.jbi.2017.04.011. [Epub ahead of print]. PMID: 28428140. DOI: 10.1016/j.jbi.2017.04.011

McIvor, WR, Banergee A, Boulet JR, Weinger MB, Bekhuis T, Tseytlin E, Torsher L, Simulation‑Based Assessment Research Group. A taxonomy of scenario delivery and documentation deviations during high-fidelity simulations. Simulation in Healthcare. 2017 Feb;12(1):1-8. PMID: 28146449.

Bekhuis T, Tseytlin E. EDDA Study Designs Taxonomy, version 2.0

  1. Machine readable files released 16 July 2016. Freely available for noncommercial use at http://bioportal.bioontology.org/ontologies/EDDA. Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).
  2. PDF [111 pages] released 12 July 2016. Freely available for noncommercial use via ResearchGate at https://doi.org/10.13140/RG.2.1.3769.2406/1. Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).

Bramer WM, Giustini D, de Jonge GB, Holland L, Bekhuis T. Deduplication of database search results for systematic reviews in EndNote. JMLA: Journal of the Medical Library Association. 2016 Jul;104(3):240-3. doi: 10.3163/1536-5050.104.3.014. PMCID: PMC4915647  DOI: 10.3163/1536-5050.104.3.014.

Straub-Morarend C, Wankiiri-Hale C, Blanchette D, Lanning, SK, Bekhuis T, Smith B, Brodie, AJ, Oliveira D, Handysides RA, Dawson D, Spallek H. U.S. Dental students’ evidence-based practice knowledge, perceptions and behavior: a cross-sectional study. Journal of Dental Education. 2016; 80(4):430-38. PMCID: PMC4893783.

Bekhuis T, Tseytlin E, Mitchell KJ. A Prototype for a Hybrid System to Support Systematic Review Teams: A Case Study of Organ Transplantation. International Workshop on Biomedical and Health Informatics, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Bethesda, MD, US, November 9, 2015, 8 pp. PMCID: PMC4742277. DOI: 10.1109/BIBM.2015.7359810.

Bekhuis T. Keywords, discoverability, and impact [invited commentary]. JMLA: J Med Lib Assoc. 2015 Jul;103(3):119-20. doi: 10.3163/1536-5050.103.3.002.PMCID: PMC4511049. DOI: 10.3163/1536-5050.103.3.002.

Faith A, Bekhuis T. HTA Database Canadian Repository [review of a repository for health technology assessments]. JMLA: J Med Lib Assoc. 2015 Oct;103(4):239-40. doi: 10.3163/1536-5050.103.4.021. PMCID: PMC4613395. doi:  10.3163/1536-5050.103.4.021.

Frazier JJ, Stein CD, Tseytlin E, Bekhuis T. Building a gold standard to construct search filters: a case study with biomarkers for oral cancer. JMLA: J Med Libr Assoc. 2015 Jan;103(1):346-354. PMCID: PMC4279929. DOI: 10.3163/1536-5050.103.1.005.

Bekhuis T, Tseytlin E, Mitchell K, Demner-Fushman D. Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence. PLoS One. Epub2014 Jan 27; 9(1):e86277. doi:10.1371/journal.pone.0086277. PMCID: PMC3903545.

Bekhuis T, Kim K, Valappil B, Spallek H. Adapting the Scottish PRIME Fissure Sealant Questionnaire for implementation research in the United States: lessons learned [report in APA PsycEXTRA database]. American Psychological Association (APA). 2014. doi: 10.1037/e502572014-001.

Bekhuis T, Kim K, Valappil B, Spallek H. PRIME Fissure Sealant Questionnaire—US Version [questionnaire in APA PsycTESTS database]. American Psychological Association (APA). 2014. doi: 10.1037/t27847-000.

Song M, O’Donnell JA, Bekhuis T, Spallek H. Are dentists interested in the oral-systemic disease connection? A qualitative study of an online community of 450 practitioners. BMC Oral Health. 2013 Nov 21;13(1):65. PMCID: PMC3924341 (highly accessed article).Featured in British Dental Journal. 2013;215(11): 545: 6 December 2013. doi:10.1038/sj.bdj.2013.1152.

Bekhuis T, Demner-Fushman D, Crowley RS. Comparative effectiveness research designs: an analysis of terms and coverage in MeSH and Emtree. J Med Lib Assoc. 2013;101(2):92-100. PMCID: PMC3634392

Bekhuis T, Demner-Fushman D. Screening nonrandomized studies for medical systematic reviews: A comparative study of classifiers. Artif Intell Med. 2012 Jul;55(3):197-207. Epub 2012 Jun 5. PMCID: PMC3393813

Bekhuis T, Kreinacke M, Spallek H, Song M, O’Donnell AJ. Using natural language processing to enable in-depth analysis of clinical messages posted to an Internet mailing list: A feasibility study. J Med Internet Res. 2011, 13(4):e98. PMCID: PMC3236668

Bekhuis T. Chlorhexidine varnish may prevent dental caries in children and adolescents [invited evaluation of a systematic review]. Journal of Evidence-based Dental Practice, 2011, 11(2):84-6. PMID: 21605831 DOI: 10.1016/j.jebdp.2011.03.004.

Bekhuis T, Demner-Fushman D. Towards automating the initial screening phase of a systematic review. Stud Health Technol Inform. 2010, 160(Pt 1):146-50. PMID: 20841667. http://ebooks.iospress.nl/publication/13412.

Spallek H, Song M, Polk DE, Bekhuis T, Frantsve-Hawley J, Aravamudhan K. Barriers to implementing evidence-based clinical guidelines: A survey of early adopters. J Evid Based Dent Pract. 2010, (10)4, 195-206. PMCID: PMC3011934.

Bekhuis T. Music therapy may reduce pain and anxiety in children undergoing medical and dental procedures [invited evaluation of a systematic review]. Journal of Evidence-based Dental Practice, 2009, 9(4), 213-14. DOI:10.1016/j.jebdp.2009.03.002. PMCID: PMC2778574.

Bekhuis T, Thyvalikakath T, Oliver R. Interventions for treating ameloblastomas of the jaws [protocol]. Cochrane Database of Systematic Reviews, 2009, Issue 4. Art. No.: CD003975. DOI: 10.1002/14651858.CD003975.pub2.

Bekhuis T. Conceptual biology, hypothesis discovery, and text mining: Swanson’s legacy [in top ten of most accessed articles]. Biomedical Digital Libraries, 2006, 3:2. PMCID: PMC1459187.